Please cite this publication if you are using PathVisio 3.0.0+ in your research:

PathVisio 3: An Extendable Pathway Analysis Toolbox.
Martina Kutmon, Martijn P. van Iersel, Anwesha Bohler, Thomas Kelder, Nuno Nunes, Alexander R. Pico, Chris T. Evelo
PLoS Comput Biol 11(2): e1004085 (2015).
doi: 10.1371/journal.pcbi.1004085

If you are using the WikiPathways pathway collections, please also cite the latest WikiPathways publications:

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research..
Denise N Slenter, Martina Kutmon, Kristina Hanspers, Anders Riutta, Jacob Windsor, Nuno Nunes, Jonathan Mélius, Elisa Cirillo, Susan L Coort, Daniela Digles, Friederike Ehrhart, Pieter Giesbertz, Marianthi Kalafati, Marvin Martens, Ryan Miller, Kozo Nishida, Linda Rieswijk, Andra Waagmeester, Lars M T Eijssen, Chris T Evelo, Alexander R Pico, Egon L Willighagen
Nucleic Acids Res. 46(D1):D661-D667 (2018).
doi: 10.1093/nar/gkx1064


If you are using an older app version of PathVisio, please cite this publication in your research:

Presenting and exploring biological pathways with PathVisio.
Martijn P van Iersel, Thomas Kelder, Alexander R Pico, Kristina Hanspers, Susan Coort, Bruce R Conklin, Chris Evelo
BMC Bioinformatics volume 9, Article number: 399 (2008)
doi: 10.1186/1471-2105-9-399